bcftools - Calling and manipulating files VCF and BCF formats

Property Value
Distribution NetBSD 8.0
Repository NetBSD amd64
Package filename bcftools-1.9nb1.tgz
Package name bcftools
Package version 1.9nb1
Package release -
Package architecture amd64
Package type tgz
Category biology
Homepage http://samtools.github.io/bcftools/
License mit
Maintainer -
Download size 491.64 KB
Installed size 1.77 MB
BCFtools is a program for variant calling and manipulating files in the Variant
Call Format (VCF) and its binary counterpart BCF. All commands work
transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
In order to avoid tedious repetion, throughout this document we will use "VCF"
and "BCF" interchangeably, unless specifically noted.
Most commands accept VCF, bgzipped VCF and BCF with filetype detected
automatically even when streaming from a pipe. Indexed VCF and BCF work in all
situations. Unindexed VCF and BCF and streams work in most, but not all
situations. In general, whenever multiple VCFs are read simultaneously, they
must be indexed and therefore also compressed.


Package Version Architecture Repository
bcftools-1.9nb1.tgz 1.9nb1 i386 NetBSD
bcftools - - -


Name Value
htslib >= 1.8
python37 >= 3.7.0


Type URL
Mirror ftp.netbsd.org
Binary Package bcftools-1.9nb1.tgz
Source Package bcftools

Install Howto

Install bcftools tgz package:

# pkg_add bcftools

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